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Solution Strategy

Governance & Federation

The fundamental strategic decision for 1+MG is Federation.

  • No Central Data Lake: Genomic data is too sensitive and voluminous to move. It remains legally and physically within the Member State (National Node)1.
  • Bring Compute to Data: Analysis algorithms are containerized (e.g., Nextflow pipelines) and dispatched to the data location, returning only aggregated results.
  • Sovereignty First: The architecture prioritizes the Local Data Authority (DAC). No access is granted without a cryptographically verifiable token from the local DAC.

Trust Framework

We employ a Zero Trust approach where identity and authorization are decoupled2.

  • Identity (Who are you?): Verified by LS AAI (Life Science Authentication and Authorization Infrastructure). Users log in via their home university or research institute.
  • authorization (What can you do?): Managed by GA4GH Passports. DACs issue "Visas" (signed claims) that travel with the user's request. The National Node verifies these Visas before executing any query or workload.

Technology Stack & Standards

To ensure interoperability across 27+ countries, we rely strictly on open standards3.

AreaStandard / TechnologyMotivation
DiscoveryGA4GH Beacon v2enabling feasibility queries without exposing raw data.
Data AccessGA4GH DRS / htsgetStandardized streaming of large genomic files (VCF/CRAM).
ComputeGA4GH WES / WfExSAbstracting the execution environment. Mandating RO-Crates for packaging.
MetadataHealthDCAT-AP 5.0Alignment with EU Health Data Space (EHDS).
ContainerizationDocker / SingularityEnsuring reproducible analysis environments.
OrchestrationKubernetesManaging the lifecycle of microservices and compute jobs.

Organizational Strategy

  • GDI Starter Kit: To support smaller Member States, we provide a "Reference Implementation" (Starter Kit) that can be deployed out-of-the-box to spin up a compliant National Node4. It includes Galaxy Europe integration, Beacon v2, and WfExS.
  • Separation of Concerns: The Genome EDIC handles the catalog and governance logic, while Member States handle the storage and compute infrastructure.

Footnotes

  1. Bridging the European Data Sharing Divide in Genomic Science. (https://doi.org/10.2196/37236)

  2. B1MG Deliverable D1.5 - Stakeholders trust in genomic data sharing landscape analysis. (https://zenodo.org/records/6382431)

  3. GDI Deliverable D8.7 - Report on semantic interoperability scenarios. (https://zenodo.org/records/11550316)

  4. GDI Deliverable D2.1 - First analysis of cost elements for the setup of 1+MG infrastructure. (https://zenodo.org/records/10728049)